Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lisr_0217 | Lisr_0627 | Lisr_0217 | Lisr_0627 | Aconitate hydratase. | Phosphatidylethanolamine-binding protein. | 0.710 |
Lisr_0217 | acnA_1 | Lisr_0217 | Lisr_1599 | Aconitate hydratase. | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.900 |
Lisr_0217 | acnA_2 | Lisr_0217 | Lisr_2414 | Aconitate hydratase. | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.900 |
Lisr_0217 | gltA | Lisr_0217 | Lisr_1046 | Aconitate hydratase. | Citrate synthase; Belongs to the citrate synthase family. | 0.973 |
Lisr_0217 | icd | Lisr_0217 | Lisr_0024 | Aconitate hydratase. | Isocitrate dehydrogenase. | 0.976 |
Lisr_0217 | prpC | Lisr_0217 | Lisr_1957 | Aconitate hydratase. | 2-methylcitrate synthase; Belongs to the citrate synthase family. | 0.743 |
Lisr_0217 | rplS | Lisr_0217 | Lisr_2347 | Aconitate hydratase. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.735 |
Lisr_0217 | rpmB | Lisr_0217 | Lisr_2670 | Aconitate hydratase. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.726 |
Lisr_0217 | rpmF | Lisr_0217 | Lisr_2037 | Aconitate hydratase. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.719 |
Lisr_0217 | sodB | Lisr_0217 | Lisr_2788 | Aconitate hydratase. | Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.759 |
Lisr_0627 | Lisr_0217 | Lisr_0627 | Lisr_0217 | Phosphatidylethanolamine-binding protein. | Aconitate hydratase. | 0.710 |
Lisr_0627 | acnA_1 | Lisr_0627 | Lisr_1599 | Phosphatidylethanolamine-binding protein. | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.710 |
Lisr_0627 | acnA_2 | Lisr_0627 | Lisr_2414 | Phosphatidylethanolamine-binding protein. | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.710 |
Lisr_0627 | gltA | Lisr_0627 | Lisr_1046 | Phosphatidylethanolamine-binding protein. | Citrate synthase; Belongs to the citrate synthase family. | 0.647 |
Lisr_0627 | prpC | Lisr_0627 | Lisr_1957 | Phosphatidylethanolamine-binding protein. | 2-methylcitrate synthase; Belongs to the citrate synthase family. | 0.647 |
Lisr_0627 | rplS | Lisr_0627 | Lisr_2347 | Phosphatidylethanolamine-binding protein. | 50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.894 |
Lisr_0627 | rpmB | Lisr_0627 | Lisr_2670 | Phosphatidylethanolamine-binding protein. | 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.824 |
Lisr_0627 | rpmF | Lisr_0627 | Lisr_2037 | Phosphatidylethanolamine-binding protein. | 50S ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family. | 0.884 |
Lisr_0627 | sodB | Lisr_0627 | Lisr_2788 | Phosphatidylethanolamine-binding protein. | Superoxide dismutase, iron; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.807 |
acnA_1 | Lisr_0217 | Lisr_1599 | Lisr_0217 | Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | Aconitate hydratase. | 0.900 |
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