Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lisr_0405 | Lisr_0406 | Lisr_0405 | Lisr_0406 | IcmL-like protein. | Hypothetical protein. | 0.746 |
Lisr_0405 | Lisr_0407 | Lisr_0405 | Lisr_0407 | IcmL-like protein. | ABC transporter permease. | 0.507 |
Lisr_0405 | abcT3 | Lisr_0405 | Lisr_0408 | IcmL-like protein. | ABC transporter ATP binding protein. | 0.507 |
Lisr_0406 | Lisr_0405 | Lisr_0406 | Lisr_0405 | Hypothetical protein. | IcmL-like protein. | 0.746 |
Lisr_0406 | Lisr_0407 | Lisr_0406 | Lisr_0407 | Hypothetical protein. | ABC transporter permease. | 0.483 |
Lisr_0406 | abcT3 | Lisr_0406 | Lisr_0408 | Hypothetical protein. | ABC transporter ATP binding protein. | 0.483 |
Lisr_0407 | Lisr_0405 | Lisr_0407 | Lisr_0405 | ABC transporter permease. | IcmL-like protein. | 0.507 |
Lisr_0407 | Lisr_0406 | Lisr_0407 | Lisr_0406 | ABC transporter permease. | Hypothetical protein. | 0.483 |
Lisr_0407 | abcT3 | Lisr_0407 | Lisr_0408 | ABC transporter permease. | ABC transporter ATP binding protein. | 0.970 |
Lisr_2398 | abcT3 | Lisr_2398 | Lisr_0408 | Major facilitator family transporter. | ABC transporter ATP binding protein. | 0.439 |
abcT3 | Lisr_0405 | Lisr_0408 | Lisr_0405 | ABC transporter ATP binding protein. | IcmL-like protein. | 0.507 |
abcT3 | Lisr_0406 | Lisr_0408 | Lisr_0406 | ABC transporter ATP binding protein. | Hypothetical protein. | 0.483 |
abcT3 | Lisr_0407 | Lisr_0408 | Lisr_0407 | ABC transporter ATP binding protein. | ABC transporter permease. | 0.970 |
abcT3 | Lisr_2398 | Lisr_0408 | Lisr_2398 | ABC transporter ATP binding protein. | Major facilitator family transporter. | 0.439 |
abcT3 | cysC | Lisr_0408 | Lisr_0169 | ABC transporter ATP binding protein. | Elongation factor Tu (EF-Tu); Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | 0.412 |
cysC | abcT3 | Lisr_0169 | Lisr_0408 | Elongation factor Tu (EF-Tu); Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. | ABC transporter ATP binding protein. | 0.412 |