Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Lisr_0484Phage repressor. (218 aa)    
Predicted Functional Partners:
lvrA_1
Protein LvrA.
 
     0.863
lvrA2
Vir region protein.
 
     0.726
Lisr_0113
6-pyruvoyl tetrahydropterin synthase.
  
    0.697
Lisr_0634
Hypothetical protein.
  
     0.668
Lisr_0851
IcmF.
  
     0.660
Lisr_1579
Cofactor-independent phosphoglycerate mutase.
  
     0.650
Lisr_0857
Protein IcmE (DotG).
 
     0.633
Lisr_1222
Putative membrane protein YdgA-like protein.
  
     0.620
Lisr_0110
Putative helicase/relaxase.
  
     0.593
ung
Uracil DNA glycosylase; Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.
  
    0.581
Your Current Organism:
Legionella israelensis
NCBI taxonomy Id: 454
Other names: ATCC 43119, CCUG 31115, CIP 103879, DSM 19235, JCM 7560, L. israelensis, NCTC 12010, strain Bercovier 4
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