Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lisr_0560 | LptA | Lisr_0560 | Lisr_0558 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | OstA family protein. | 0.816 |
Lisr_0560 | LptB | Lisr_0560 | Lisr_0557 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | ABC transporter ATP binding protein. | 0.865 |
Lisr_0560 | kdsD | Lisr_0560 | Lisr_0561 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Polysialic acid capsule expression protein. | 0.993 |
Lisr_0560 | lptC | Lisr_0560 | Lisr_0559 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Lipopolysaccharide export system protein LptC. | 0.892 |
Lisr_0560 | lpxA | Lisr_0560 | Lisr_2220 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | UDP-N-acetylglucosamine acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.498 |
Lisr_0560 | lpxB | Lisr_0560 | Lisr_2014 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.544 |
Lisr_0560 | lpxD_1 | Lisr_0560 | Lisr_1501 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily. | 0.404 |
Lisr_2508 | LptB | Lisr_2508 | Lisr_0557 | ABC transporter permease. | ABC transporter ATP binding protein. | 0.933 |
LptA | Lisr_0560 | Lisr_0558 | Lisr_0560 | OstA family protein. | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.816 |
LptA | LptB | Lisr_0558 | Lisr_0557 | OstA family protein. | ABC transporter ATP binding protein. | 0.965 |
LptA | LptF | Lisr_0558 | Lisr_0309 | OstA family protein. | Hypothetical protein. | 0.467 |
LptA | kdsD | Lisr_0558 | Lisr_0561 | OstA family protein. | Polysialic acid capsule expression protein. | 0.805 |
LptA | lptC | Lisr_0558 | Lisr_0559 | OstA family protein. | Lipopolysaccharide export system protein LptC. | 0.994 |
LptB | Lisr_0560 | Lisr_0557 | Lisr_0560 | ABC transporter ATP binding protein. | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.865 |
LptB | Lisr_2508 | Lisr_0557 | Lisr_2508 | ABC transporter ATP binding protein. | ABC transporter permease. | 0.933 |
LptB | LptA | Lisr_0557 | Lisr_0558 | ABC transporter ATP binding protein. | OstA family protein. | 0.965 |
LptB | LptF | Lisr_0557 | Lisr_0309 | ABC transporter ATP binding protein. | Hypothetical protein. | 0.985 |
LptB | kdsD | Lisr_0557 | Lisr_0561 | ABC transporter ATP binding protein. | Polysialic acid capsule expression protein. | 0.902 |
LptB | lptC | Lisr_0557 | Lisr_0559 | ABC transporter ATP binding protein. | Lipopolysaccharide export system protein LptC. | 0.999 |
LptB | lptG | Lisr_0557 | Lisr_0308 | ABC transporter ATP binding protein. | Hypothetical protein. | 0.991 |
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