Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lisr_0651 | Lisr_0654 | Lisr_0651 | Lisr_0654 | Putative secreted esterase. | Hypothetical protein. | 0.772 |
Lisr_0651 | Lisr_0826 | Lisr_0651 | Lisr_0826 | Putative secreted esterase. | LuxR family transcriptional regulator. | 0.768 |
Lisr_0651 | Lisr_1559 | Lisr_0651 | Lisr_1559 | Putative secreted esterase. | RES domain-containing protein. | 0.760 |
Lisr_0651 | Lisr_1562 | Lisr_0651 | Lisr_1562 | Putative secreted esterase. | Potassium efflux system KefA. | 0.774 |
Lisr_0651 | Lisr_2181 | Lisr_0651 | Lisr_2181 | Putative secreted esterase. | MtN3/saliva family protein. | 0.772 |
Lisr_0651 | Lisr_2202 | Lisr_0651 | Lisr_2202 | Putative secreted esterase. | Site-specific tyrosine recombinase XerC. | 0.763 |
Lisr_0651 | Lisr_2607 | Lisr_0651 | Lisr_2607 | Putative secreted esterase. | Integrase; Belongs to the 'phage' integrase family. | 0.765 |
Lisr_0651 | chiA1_1 | Lisr_0651 | Lisr_0100 | Putative secreted esterase. | Chitinase A1 precursor. | 0.803 |
Lisr_0651 | plaB | Lisr_0651 | Lisr_1707 | Putative secreted esterase. | Phospholipase. | 0.776 |
Lisr_0651 | rssA | Lisr_0651 | Lisr_1469 | Putative secreted esterase. | Esterase of the alpha-beta hydrolase superfamily protein. | 0.772 |
Lisr_0654 | Lisr_0651 | Lisr_0654 | Lisr_0651 | Hypothetical protein. | Putative secreted esterase. | 0.772 |
Lisr_0654 | Lisr_0826 | Lisr_0654 | Lisr_0826 | Hypothetical protein. | LuxR family transcriptional regulator. | 0.739 |
Lisr_0654 | Lisr_1559 | Lisr_0654 | Lisr_1559 | Hypothetical protein. | RES domain-containing protein. | 0.733 |
Lisr_0654 | Lisr_1562 | Lisr_0654 | Lisr_1562 | Hypothetical protein. | Potassium efflux system KefA. | 0.733 |
Lisr_0654 | Lisr_2181 | Lisr_0654 | Lisr_2181 | Hypothetical protein. | MtN3/saliva family protein. | 0.759 |
Lisr_0654 | Lisr_2202 | Lisr_0654 | Lisr_2202 | Hypothetical protein. | Site-specific tyrosine recombinase XerC. | 0.738 |
Lisr_0654 | Lisr_2607 | Lisr_0654 | Lisr_2607 | Hypothetical protein. | Integrase; Belongs to the 'phage' integrase family. | 0.746 |
Lisr_0654 | chiA1_1 | Lisr_0654 | Lisr_0100 | Hypothetical protein. | Chitinase A1 precursor. | 0.764 |
Lisr_0654 | plaB | Lisr_0654 | Lisr_1707 | Hypothetical protein. | Phospholipase. | 0.769 |
Lisr_0654 | rssA | Lisr_0654 | Lisr_1469 | Hypothetical protein. | Esterase of the alpha-beta hydrolase superfamily protein. | 0.764 |
page 1 of 6