Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lisr_1041 | Lisr_1042 | Lisr_1041 | Lisr_1042 | Nucleotide binding protein FliI. | Flagellar assembly protein H. | 0.998 |
Lisr_1041 | Lisr_1373 | Lisr_1041 | Lisr_1373 | Nucleotide binding protein FliI. | Flagellar biosynthesis MinD. | 0.580 |
Lisr_1041 | Lisr_1623 | Lisr_1041 | Lisr_1623 | Nucleotide binding protein FliI. | Regulatory protein (GGDEF domain). | 0.983 |
Lisr_1041 | flgC | Lisr_1041 | Lisr_1292 | Nucleotide binding protein FliI. | Flagellar basal body rod protein FlgC. | 0.984 |
Lisr_1041 | flgF | Lisr_1041 | Lisr_1286 | Nucleotide binding protein FliI. | Flagellar basal body rod protein FlgF. | 0.954 |
Lisr_1041 | flgH | Lisr_1041 | Lisr_1289 | Nucleotide binding protein FliI. | Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.933 |
Lisr_1041 | flgI | Lisr_1041 | Lisr_1290 | Nucleotide binding protein FliI. | Flagellar P-ring protein (precursor) FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.945 |
Lisr_1041 | fliA | Lisr_1041 | Lisr_1372 | Nucleotide binding protein FliI. | Sigma factor 28; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | 0.864 |
Lisr_1041 | fliN_1 | Lisr_1041 | Lisr_1034 | Nucleotide binding protein FliI. | Flagellar motor switch protein FliN. | 0.989 |
Lisr_1041 | fliN_2 | Lisr_1041 | Lisr_1374 | Nucleotide binding protein FliI. | Flagellar motor switch protein FliN. | 0.878 |
Lisr_1042 | Lisr_1041 | Lisr_1042 | Lisr_1041 | Flagellar assembly protein H. | Nucleotide binding protein FliI. | 0.998 |
Lisr_1042 | Lisr_1623 | Lisr_1042 | Lisr_1623 | Flagellar assembly protein H. | Regulatory protein (GGDEF domain). | 0.974 |
Lisr_1042 | flgC | Lisr_1042 | Lisr_1292 | Flagellar assembly protein H. | Flagellar basal body rod protein FlgC. | 0.966 |
Lisr_1042 | flgF | Lisr_1042 | Lisr_1286 | Flagellar assembly protein H. | Flagellar basal body rod protein FlgF. | 0.844 |
Lisr_1042 | flgH | Lisr_1042 | Lisr_1289 | Flagellar assembly protein H. | Flagellar basal body L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.931 |
Lisr_1042 | flgI | Lisr_1042 | Lisr_1290 | Flagellar assembly protein H. | Flagellar P-ring protein (precursor) FlgI; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation. | 0.854 |
Lisr_1042 | fliA | Lisr_1042 | Lisr_1372 | Flagellar assembly protein H. | Sigma factor 28; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. | 0.572 |
Lisr_1042 | fliN_1 | Lisr_1042 | Lisr_1034 | Flagellar assembly protein H. | Flagellar motor switch protein FliN. | 0.984 |
Lisr_1042 | fliN_2 | Lisr_1042 | Lisr_1374 | Flagellar assembly protein H. | Flagellar motor switch protein FliN. | 0.932 |
Lisr_1373 | Lisr_1041 | Lisr_1373 | Lisr_1041 | Flagellar biosynthesis MinD. | Nucleotide binding protein FliI. | 0.580 |
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