Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ggt | GshA | Lisr_1216 | Lisr_0794 | Gamma-glutamyltranspeptidase. | Glutamate--cysteine ligase. | 0.900 |
Ggt | Lisr_1147 | Lisr_1216 | Lisr_1147 | Gamma-glutamyltranspeptidase. | Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. | 0.910 |
Ggt | Lisr_1416 | Lisr_1216 | Lisr_1416 | Gamma-glutamyltranspeptidase. | Aminopeptidase; Belongs to the peptidase M17 family. | 0.913 |
Ggt | gshB | Lisr_1216 | Lisr_0793 | Gamma-glutamyltranspeptidase. | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | 0.918 |
Ggt | pepA | Lisr_1216 | Lisr_0310 | Gamma-glutamyltranspeptidase. | Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.913 |
Ggt | pepN | Lisr_1216 | Lisr_1027 | Gamma-glutamyltranspeptidase. | Aminopeptidase. | 0.907 |
GshA | Ggt | Lisr_0794 | Lisr_1216 | Glutamate--cysteine ligase. | Gamma-glutamyltranspeptidase. | 0.900 |
GshA | Lisr_1147 | Lisr_0794 | Lisr_1147 | Glutamate--cysteine ligase. | Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. | 0.913 |
GshA | Lisr_1416 | Lisr_0794 | Lisr_1416 | Glutamate--cysteine ligase. | Aminopeptidase; Belongs to the peptidase M17 family. | 0.902 |
GshA | Lisr_2762 | Lisr_0794 | Lisr_2762 | Glutamate--cysteine ligase. | Aspartate aminotransferase. | 0.801 |
GshA | cysK | Lisr_0794 | Lisr_0903 | Glutamate--cysteine ligase. | Cystathionine beta synthase. | 0.815 |
GshA | gshB | Lisr_0794 | Lisr_0793 | Glutamate--cysteine ligase. | Glutathione synthetase; Belongs to the prokaryotic GSH synthase family. | 0.981 |
GshA | metC | Lisr_0794 | Lisr_1152 | Glutamate--cysteine ligase. | Cystathionine beta-lyase. | 0.805 |
GshA | pepA | Lisr_0794 | Lisr_0310 | Glutamate--cysteine ligase. | Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides. | 0.902 |
GshA | pepN | Lisr_0794 | Lisr_1027 | Glutamate--cysteine ligase. | Aminopeptidase. | 0.908 |
Lisr_1147 | Ggt | Lisr_1147 | Lisr_1216 | Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. | Gamma-glutamyltranspeptidase. | 0.910 |
Lisr_1147 | GshA | Lisr_1147 | Lisr_0794 | Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. | Glutamate--cysteine ligase. | 0.913 |
Lisr_1147 | Lisr_1416 | Lisr_1147 | Lisr_1416 | Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. | Aminopeptidase; Belongs to the peptidase M17 family. | 0.900 |
Lisr_1147 | Lisr_2762 | Lisr_1147 | Lisr_2762 | Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. | Aspartate aminotransferase. | 0.800 |
Lisr_1147 | cysK | Lisr_1147 | Lisr_0903 | Carboxylate-amine ligase; ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity; Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily. | Cystathionine beta synthase. | 0.800 |
page 1 of 5