Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lisr_0004 | Lisr_1580 | Lisr_0004 | Lisr_1580 | Hypothetical protein. | Aminotransferase. | 0.493 |
Lisr_0004 | mutT | Lisr_0004 | Lisr_1575 | Hypothetical protein. | Mutator protein MutT; Belongs to the Nudix hydrolase family. | 0.466 |
Lisr_0004 | secA | Lisr_0004 | Lisr_1576 | Hypothetical protein. | Preprotein translocase, secretion protein SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.553 |
Lisr_1580 | Lisr_0004 | Lisr_1580 | Lisr_0004 | Aminotransferase. | Hypothetical protein. | 0.493 |
Lisr_1580 | mutT | Lisr_1580 | Lisr_1575 | Aminotransferase. | Mutator protein MutT; Belongs to the Nudix hydrolase family. | 0.413 |
Lisr_1580 | recJ | Lisr_1580 | Lisr_1578 | Aminotransferase. | single-stranded-DNA-specific exonuclease RecJ. | 0.790 |
Lisr_1580 | secA | Lisr_1580 | Lisr_1576 | Aminotransferase. | Preprotein translocase, secretion protein SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.404 |
Lisr_1580 | yjbN | Lisr_1580 | Lisr_1577 | Aminotransferase. | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.574 |
mutT | Lisr_0004 | Lisr_1575 | Lisr_0004 | Mutator protein MutT; Belongs to the Nudix hydrolase family. | Hypothetical protein. | 0.466 |
mutT | Lisr_1580 | Lisr_1575 | Lisr_1580 | Mutator protein MutT; Belongs to the Nudix hydrolase family. | Aminotransferase. | 0.413 |
mutT | recJ | Lisr_1575 | Lisr_1578 | Mutator protein MutT; Belongs to the Nudix hydrolase family. | single-stranded-DNA-specific exonuclease RecJ. | 0.465 |
mutT | secA | Lisr_1575 | Lisr_1576 | Mutator protein MutT; Belongs to the Nudix hydrolase family. | Preprotein translocase, secretion protein SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.790 |
mutT | yjbN | Lisr_1575 | Lisr_1577 | Mutator protein MutT; Belongs to the Nudix hydrolase family. | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.518 |
recJ | Lisr_1580 | Lisr_1578 | Lisr_1580 | single-stranded-DNA-specific exonuclease RecJ. | Aminotransferase. | 0.790 |
recJ | mutT | Lisr_1578 | Lisr_1575 | single-stranded-DNA-specific exonuclease RecJ. | Mutator protein MutT; Belongs to the Nudix hydrolase family. | 0.465 |
recJ | secA | Lisr_1578 | Lisr_1576 | single-stranded-DNA-specific exonuclease RecJ. | Preprotein translocase, secretion protein SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.400 |
recJ | yjbN | Lisr_1578 | Lisr_1577 | single-stranded-DNA-specific exonuclease RecJ. | tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. | 0.606 |
secA | Lisr_0004 | Lisr_1576 | Lisr_0004 | Preprotein translocase, secretion protein SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | Hypothetical protein. | 0.553 |
secA | Lisr_1580 | Lisr_1576 | Lisr_1580 | Preprotein translocase, secretion protein SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | Aminotransferase. | 0.404 |
secA | mutT | Lisr_1576 | Lisr_1575 | Preprotein translocase, secretion protein SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | Mutator protein MutT; Belongs to the Nudix hydrolase family. | 0.790 |
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