Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Lisr_0470 | Lisr_0472 | Exported membrane protein. | Hypothetical protein. | 0.949 |
Lisr_0470 | Lisr_0479 | Exported membrane protein. | Bile acid beta-glucosidase. | 0.945 |
Lisr_0470 | Lisr_1625 | Exported membrane protein. | Hypothetical protein. | 0.637 |
Lisr_0470 | Lisr_1626 | Exported membrane protein. | Two-component sensor histidine kinase. | 0.767 |
Lisr_0470 | Lisr_1864 | Exported membrane protein. | TraU protein. | 0.784 |
Lisr_0470 | Lisr_1866 | Exported membrane protein. | Membrane protein. | 0.784 |
Lisr_0472 | Lisr_0470 | Hypothetical protein. | Exported membrane protein. | 0.949 |
Lisr_0472 | Lisr_0479 | Hypothetical protein. | Bile acid beta-glucosidase. | 0.946 |
Lisr_0472 | Lisr_1625 | Hypothetical protein. | Hypothetical protein. | 0.645 |
Lisr_0472 | Lisr_1626 | Hypothetical protein. | Two-component sensor histidine kinase. | 0.769 |
Lisr_0472 | Lisr_1864 | Hypothetical protein. | TraU protein. | 0.792 |
Lisr_0472 | Lisr_1866 | Hypothetical protein. | Membrane protein. | 0.792 |
Lisr_0479 | Lisr_0470 | Bile acid beta-glucosidase. | Exported membrane protein. | 0.945 |
Lisr_0479 | Lisr_0472 | Bile acid beta-glucosidase. | Hypothetical protein. | 0.946 |
Lisr_0479 | Lisr_1625 | Bile acid beta-glucosidase. | Hypothetical protein. | 0.622 |
Lisr_0479 | Lisr_1626 | Bile acid beta-glucosidase. | Two-component sensor histidine kinase. | 0.767 |
Lisr_0479 | Lisr_1864 | Bile acid beta-glucosidase. | TraU protein. | 0.792 |
Lisr_0479 | Lisr_1866 | Bile acid beta-glucosidase. | Membrane protein. | 0.792 |
Lisr_1623 | Lisr_1624 | Regulatory protein (GGDEF domain). | Hypothetical protein. | 0.898 |
Lisr_1623 | Lisr_1625 | Regulatory protein (GGDEF domain). | Hypothetical protein. | 0.898 |
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