STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lisr_1658L-lysine dehydrogenase. (362 aa)    
Predicted Functional Partners:
Lisr_1657
Piperidine-6-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
  
 0.920
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase protein.
   
 
 0.671
Lisr_0004
Hypothetical protein.
  
  
 0.655
fadA
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.584
lysAC
Bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 0.529
Lisr_0003
Hypothetical protein; Belongs to the ATP-dependent AMP-binding enzyme family.
  
  
 0.483
Lisr_1179
Peptide synthetase, non-ribosomal.
  
  
 0.471
Lisr_1659
Hypothetical protein.
       0.458
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
     
 0.413
Lisr_2652
Peptide synthetase.
  
  
 0.412
Your Current Organism:
Legionella israelensis
NCBI taxonomy Id: 454
Other names: ATCC 43119, CCUG 31115, CIP 103879, DSM 19235, JCM 7560, L. israelensis, NCTC 12010, strain Bercovier 4
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