Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ArgE-2 | Lisr_1712 | Lisr_1715 | Lisr_1712 | Acetylornithine deacetylase. | Major facilitator family transporter. | 0.503 |
ArgE-2 | Lisr_1716 | Lisr_1715 | Lisr_1716 | Acetylornithine deacetylase. | Putative peptidase. | 0.783 |
ArgE-2 | gbsA | Lisr_1715 | Lisr_1713 | Acetylornithine deacetylase. | Glycine betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.778 |
ArgE-2 | ltaE | Lisr_1715 | Lisr_1714 | Acetylornithine deacetylase. | Low specificity L-threonine aldolase. | 0.813 |
Lisr_0672 | gcvPB | Lisr_0672 | Lisr_0399 | Short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.469 |
Lisr_0672 | kbl | Lisr_0672 | Lisr_0920 | Short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 2-amino-3-ketobutyrate coenzyme A ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA. | 0.900 |
Lisr_0672 | ltaE | Lisr_0672 | Lisr_1714 | Short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Low specificity L-threonine aldolase. | 0.903 |
Lisr_0672 | tdh | Lisr_0672 | Lisr_0921 | Short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Threonine(-3-)dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. | 0.903 |
Lisr_1712 | ArgE-2 | Lisr_1712 | Lisr_1715 | Major facilitator family transporter. | Acetylornithine deacetylase. | 0.503 |
Lisr_1712 | Lisr_1716 | Lisr_1712 | Lisr_1716 | Major facilitator family transporter. | Putative peptidase. | 0.521 |
Lisr_1712 | gbsA | Lisr_1712 | Lisr_1713 | Major facilitator family transporter. | Glycine betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.503 |
Lisr_1712 | ltaE | Lisr_1712 | Lisr_1714 | Major facilitator family transporter. | Low specificity L-threonine aldolase. | 0.503 |
Lisr_1716 | ArgE-2 | Lisr_1716 | Lisr_1715 | Putative peptidase. | Acetylornithine deacetylase. | 0.783 |
Lisr_1716 | Lisr_1712 | Lisr_1716 | Lisr_1712 | Putative peptidase. | Major facilitator family transporter. | 0.521 |
Lisr_1716 | gbsA | Lisr_1716 | Lisr_1713 | Putative peptidase. | Glycine betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.739 |
Lisr_1716 | ltaE | Lisr_1716 | Lisr_1714 | Putative peptidase. | Low specificity L-threonine aldolase. | 0.701 |
gbsA | ArgE-2 | Lisr_1713 | Lisr_1715 | Glycine betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Acetylornithine deacetylase. | 0.778 |
gbsA | Lisr_1712 | Lisr_1713 | Lisr_1712 | Glycine betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Major facilitator family transporter. | 0.503 |
gbsA | Lisr_1716 | Lisr_1713 | Lisr_1716 | Glycine betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Putative peptidase. | 0.739 |
gbsA | ltaE | Lisr_1713 | Lisr_1714 | Glycine betaine aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Low specificity L-threonine aldolase. | 0.790 |
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