Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lisr_0365 | fimV_1 | Lisr_0365 | Lisr_1935 | Ubiquitin family protein. | FimV protein. | 0.727 |
Lisr_1937 | fimV_1 | Lisr_1937 | Lisr_1935 | DNA-binding protein. | FimV protein. | 0.436 |
Lisr_1937 | hisS | Lisr_1937 | Lisr_1938 | DNA-binding protein. | histidyl-tRNA synthetase. | 0.808 |
Lisr_1937 | pilF | Lisr_1937 | Lisr_1936 | DNA-binding protein. | Fimbrial biogenesis and twitching motility protein PilF. | 0.837 |
fimV_1 | Lisr_0365 | Lisr_1935 | Lisr_0365 | FimV protein. | Ubiquitin family protein. | 0.727 |
fimV_1 | Lisr_1937 | Lisr_1935 | Lisr_1937 | FimV protein. | DNA-binding protein. | 0.436 |
fimV_1 | hisS | Lisr_1935 | Lisr_1938 | FimV protein. | histidyl-tRNA synthetase. | 0.436 |
fimV_1 | pilF | Lisr_1935 | Lisr_1936 | FimV protein. | Fimbrial biogenesis and twitching motility protein PilF. | 0.522 |
fimV_1 | rpoE | Lisr_1935 | Lisr_2429 | FimV protein. | Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily. | 0.696 |
fimV_1 | truA | Lisr_1935 | Lisr_1332 | FimV protein. | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.530 |
hisS | Lisr_1937 | Lisr_1938 | Lisr_1937 | histidyl-tRNA synthetase. | DNA-binding protein. | 0.808 |
hisS | fimV_1 | Lisr_1938 | Lisr_1935 | histidyl-tRNA synthetase. | FimV protein. | 0.436 |
hisS | pilF | Lisr_1938 | Lisr_1936 | histidyl-tRNA synthetase. | Fimbrial biogenesis and twitching motility protein PilF. | 0.790 |
pilF | Lisr_1937 | Lisr_1936 | Lisr_1937 | Fimbrial biogenesis and twitching motility protein PilF. | DNA-binding protein. | 0.837 |
pilF | fimV_1 | Lisr_1936 | Lisr_1935 | Fimbrial biogenesis and twitching motility protein PilF. | FimV protein. | 0.522 |
pilF | hisS | Lisr_1936 | Lisr_1938 | Fimbrial biogenesis and twitching motility protein PilF. | histidyl-tRNA synthetase. | 0.790 |
rpoE | fimV_1 | Lisr_2429 | Lisr_1935 | Sigma factor RpoE (sigma 24); Belongs to the sigma-70 factor family. ECF subfamily. | FimV protein. | 0.696 |
truA | fimV_1 | Lisr_1332 | Lisr_1935 | tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | FimV protein. | 0.530 |