Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GspHGeneral secretion pathway protein LspH. (154 aa)    
Predicted Functional Partners:
lspJ
Type II secretory pathway protein LspJ.
 
 
 0.994
lspK
Type II secretory pathway protein.
 
 
 0.991
lspI
Type II secretory pathway protein LspI.
 
   
 0.977
lspF
Type II secretory pathway protein LspF.
 
  
 0.937
lspG
Type II secretory pathway protein LspG.
 
   
 0.898
lspD
Type II protein secretion LspD.
 
  
 0.855
Lisr_0819
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.816
Lisr_1157
General secretion pathway protein C.
 
  
 0.813
lspE
Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
 
 0.809
Lisr_0820
General secretion pathway protein.
 
  
 0.784
Your Current Organism:
Legionella israelensis
NCBI taxonomy Id: 454
Other names: ATCC 43119, CCUG 31115, CIP 103879, DSM 19235, JCM 7560, L. israelensis, NCTC 12010, strain Bercovier 4
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