Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lisr_0014 | Lisr_2355 | Lisr_0014 | Lisr_2355 | Sterol desaturase. | 2OG-Fe(II) oxygenase. | 0.504 |
Lisr_2352 | Lisr_2354 | Lisr_2352 | Lisr_2354 | Hypothetical protein. | Zinc metalloprotease. | 0.665 |
Lisr_2352 | Lisr_2355 | Lisr_2352 | Lisr_2355 | Hypothetical protein. | 2OG-Fe(II) oxygenase. | 0.486 |
Lisr_2352 | nitA | Lisr_2352 | Lisr_2353 | Hypothetical protein. | Nitrilase. | 0.773 |
Lisr_2354 | Lisr_2352 | Lisr_2354 | Lisr_2352 | Zinc metalloprotease. | Hypothetical protein. | 0.665 |
Lisr_2354 | Lisr_2355 | Lisr_2354 | Lisr_2355 | Zinc metalloprotease. | 2OG-Fe(II) oxygenase. | 0.568 |
Lisr_2354 | nitA | Lisr_2354 | Lisr_2353 | Zinc metalloprotease. | Nitrilase. | 0.681 |
Lisr_2355 | Lisr_0014 | Lisr_2355 | Lisr_0014 | 2OG-Fe(II) oxygenase. | Sterol desaturase. | 0.504 |
Lisr_2355 | Lisr_2352 | Lisr_2355 | Lisr_2352 | 2OG-Fe(II) oxygenase. | Hypothetical protein. | 0.486 |
Lisr_2355 | Lisr_2354 | Lisr_2355 | Lisr_2354 | 2OG-Fe(II) oxygenase. | Zinc metalloprotease. | 0.568 |
Lisr_2355 | Lisr_2356 | Lisr_2355 | Lisr_2356 | 2OG-Fe(II) oxygenase. | ABC transporter ATP binding protein. | 0.495 |
Lisr_2355 | Lisr_2357 | Lisr_2355 | Lisr_2357 | 2OG-Fe(II) oxygenase. | ABC transporter permease. | 0.495 |
Lisr_2355 | hemF | Lisr_2355 | Lisr_1357 | 2OG-Fe(II) oxygenase. | Oxygen-dependent coproporphyrinogen III oxidase; Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen- IX. | 0.497 |
Lisr_2355 | mnmC | Lisr_2355 | Lisr_1952 | 2OG-Fe(II) oxygenase. | Putative peptidase; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. | 0.401 |
Lisr_2355 | nitA | Lisr_2355 | Lisr_2353 | 2OG-Fe(II) oxygenase. | Nitrilase. | 0.570 |
Lisr_2355 | pyrG | Lisr_2355 | Lisr_1745 | 2OG-Fe(II) oxygenase. | CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates. | 0.438 |
Lisr_2355 | tuf | Lisr_2355 | Lisr_1831 | 2OG-Fe(II) oxygenase. | Elongation factor Tu (EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. | 0.743 |
Lisr_2356 | Lisr_2355 | Lisr_2356 | Lisr_2355 | ABC transporter ATP binding protein. | 2OG-Fe(II) oxygenase. | 0.495 |
Lisr_2356 | Lisr_2357 | Lisr_2356 | Lisr_2357 | ABC transporter ATP binding protein. | ABC transporter permease. | 0.976 |
Lisr_2357 | Lisr_2355 | Lisr_2357 | Lisr_2355 | ABC transporter permease. | 2OG-Fe(II) oxygenase. | 0.495 |
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