Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Gap | Lisr_0004 | Lisr_1696 | Lisr_0004 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Hypothetical protein. | 0.659 |
Gap | Lisr_1474 | Lisr_1696 | Lisr_1474 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.687 |
Gap | Lisr_2524 | Lisr_1696 | Lisr_2524 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | MATE efflux family protein. | 0.648 |
Gap | msrA | Lisr_1696 | Lisr_0603 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.485 |
Lisr_0004 | Gap | Lisr_0004 | Lisr_1696 | Hypothetical protein. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.659 |
Lisr_0004 | Lisr_0051 | Lisr_0004 | Lisr_0051 | Hypothetical protein. | AraC family transcriptional regulator. | 0.513 |
Lisr_0004 | Lisr_1474 | Lisr_0004 | Lisr_1474 | Hypothetical protein. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.536 |
Lisr_0004 | Lisr_2524 | Lisr_0004 | Lisr_2524 | Hypothetical protein. | MATE efflux family protein. | 0.444 |
Lisr_0004 | msrA | Lisr_0004 | Lisr_0603 | Hypothetical protein. | Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.511 |
Lisr_0051 | Lisr_0004 | Lisr_0051 | Lisr_0004 | AraC family transcriptional regulator. | Hypothetical protein. | 0.513 |
Lisr_0051 | Lisr_2524 | Lisr_0051 | Lisr_2524 | AraC family transcriptional regulator. | MATE efflux family protein. | 0.502 |
Lisr_1474 | Gap | Lisr_1474 | Lisr_1696 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.687 |
Lisr_1474 | Lisr_0004 | Lisr_1474 | Lisr_0004 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Hypothetical protein. | 0.536 |
Lisr_1474 | Lisr_2524 | Lisr_1474 | Lisr_2524 | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | MATE efflux family protein. | 0.614 |
Lisr_2524 | Gap | Lisr_2524 | Lisr_1696 | MATE efflux family protein. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.648 |
Lisr_2524 | Lisr_0004 | Lisr_2524 | Lisr_0004 | MATE efflux family protein. | Hypothetical protein. | 0.444 |
Lisr_2524 | Lisr_0051 | Lisr_2524 | Lisr_0051 | MATE efflux family protein. | AraC family transcriptional regulator. | 0.502 |
Lisr_2524 | Lisr_1474 | Lisr_2524 | Lisr_1474 | MATE efflux family protein. | 30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.614 |
Lisr_2524 | msrA | Lisr_2524 | Lisr_0603 | MATE efflux family protein. | Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | 0.412 |
msrA | Gap | Lisr_0603 | Lisr_1696 | Bifunctional methionine sulfoxide reductase B/A protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.485 |
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