STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virB11Conjugal transfer ATPase TrbB. (321 aa)    
Predicted Functional Partners:
trbI
Conjugal transfer protein TrbI.
 
  
 0.995
trbG
Conjugal transfer protein TrbG.
 
  
 0.995
trbE
Conjugal transfer protein TrbE.
 
  
 0.995
trbF
Conjugal transfer protein TrbF.
 
  
 0.994
trbD
Conjugal transfer protein TrbD.
 
  
 0.994
trbJ
Conjugal transfer protein TrbJ.
 
  
 0.992
trbL
Putative conjugal transfer protein TrbL.
 
  
 0.989
trbC
Conjugal transfer protein TrbC.
    
 0.980
traG
Conjugal transfer coupling protein TraG.
 
   
 0.902
traF
Conjugal transfer peptidase TraF.
 
   
 0.890
Your Current Organism:
Legionella israelensis
NCBI taxonomy Id: 454
Other names: ATCC 43119, CCUG 31115, CIP 103879, DSM 19235, JCM 7560, L. israelensis, NCTC 12010, strain Bercovier 4
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.