Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GshA | Lisr_1581 | Lisr_0794 | Lisr_1581 | Glutamate--cysteine ligase. | Hypothetical protein. | 0.413 |
GshA | Lisr_1965 | Lisr_0794 | Lisr_1965 | Glutamate--cysteine ligase. | Methyl-transferase. | 0.579 |
GshA | Lisr_2663 | Lisr_0794 | Lisr_2663 | Glutamate--cysteine ligase. | Hypothetical protein. | 0.747 |
Lisr_0611 | Lisr_1581 | Lisr_0611 | Lisr_1581 | Hypothetical protein. | Hypothetical protein. | 0.750 |
Lisr_0611 | Lisr_1965 | Lisr_0611 | Lisr_1965 | Hypothetical protein. | Methyl-transferase. | 0.644 |
Lisr_0611 | Lisr_2663 | Lisr_0611 | Lisr_2663 | Hypothetical protein. | Hypothetical protein. | 0.568 |
Lisr_0611 | Lisr_2688 | Lisr_0611 | Lisr_2688 | Hypothetical protein. | Zinc-finger domain protein. | 0.740 |
Lisr_0853 | Lisr_0862 | Lisr_0853 | Lisr_0862 | IcmJ protein. | Protein IcmO (DotL). | 0.951 |
Lisr_0853 | Lisr_2663 | Lisr_0853 | Lisr_2663 | IcmJ protein. | Hypothetical protein. | 0.583 |
Lisr_0853 | dotC | Lisr_0853 | Lisr_2696 | IcmJ protein. | Defect in organelle trafficking lipoprotein DotC. | 0.788 |
Lisr_0862 | Lisr_0853 | Lisr_0862 | Lisr_0853 | Protein IcmO (DotL). | IcmJ protein. | 0.951 |
Lisr_0862 | Lisr_2663 | Lisr_0862 | Lisr_2663 | Protein IcmO (DotL). | Hypothetical protein. | 0.546 |
Lisr_0862 | dotC | Lisr_0862 | Lisr_2696 | Protein IcmO (DotL). | Defect in organelle trafficking lipoprotein DotC. | 0.801 |
Lisr_1581 | GshA | Lisr_1581 | Lisr_0794 | Hypothetical protein. | Glutamate--cysteine ligase. | 0.413 |
Lisr_1581 | Lisr_0611 | Lisr_1581 | Lisr_0611 | Hypothetical protein. | Hypothetical protein. | 0.750 |
Lisr_1581 | Lisr_1965 | Lisr_1581 | Lisr_1965 | Hypothetical protein. | Methyl-transferase. | 0.662 |
Lisr_1581 | Lisr_2663 | Lisr_1581 | Lisr_2663 | Hypothetical protein. | Hypothetical protein. | 0.553 |
Lisr_1581 | Lisr_2688 | Lisr_1581 | Lisr_2688 | Hypothetical protein. | Zinc-finger domain protein. | 0.764 |
Lisr_1965 | GshA | Lisr_1965 | Lisr_0794 | Methyl-transferase. | Glutamate--cysteine ligase. | 0.579 |
Lisr_1965 | Lisr_0611 | Lisr_1965 | Lisr_0611 | Methyl-transferase. | Hypothetical protein. | 0.644 |
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