Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
TsaB | TsaE | Lisr_1913 | Lisr_2684 | O-sialoglycoprotein endopeptidase. | ATPase or kinase. | 0.969 |
TsaB | gcp | Lisr_1913 | Lisr_2536 | O-sialoglycoprotein endopeptidase. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.958 |
TsaB | miaA | Lisr_1913 | Lisr_2687 | O-sialoglycoprotein endopeptidase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.411 |
TsaE | TsaB | Lisr_2684 | Lisr_1913 | ATPase or kinase. | O-sialoglycoprotein endopeptidase. | 0.969 |
TsaE | alr | Lisr_2684 | Lisr_0195 | ATPase or kinase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.504 |
TsaE | amiB | Lisr_2684 | Lisr_2685 | ATPase or kinase. | N-acetylmuramoyl-L-alanine amidase. | 0.866 |
TsaE | gcp | Lisr_2684 | Lisr_2536 | ATPase or kinase. | O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.879 |
TsaE | miaA | Lisr_2684 | Lisr_2687 | ATPase or kinase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.853 |
TsaE | mutL | Lisr_2684 | Lisr_2686 | ATPase or kinase. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.794 |
TsaE | sspA | Lisr_2684 | Lisr_2681 | ATPase or kinase. | Stringent starvation protein A; Belongs to the GST superfamily. | 0.631 |
TsaE | sspB | Lisr_2684 | Lisr_2682 | ATPase or kinase. | ClpXP protease specificity-enhancing factor. | 0.622 |
TsaE | trmD | Lisr_2684 | Lisr_2346 | ATPase or kinase. | tRNA (guanine N1) methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. | 0.493 |
TsaE | yjeF | Lisr_2684 | Lisr_2683 | ATPase or kinase. | Carbohydrate kinase; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow the repair of both epim [...] | 0.934 |
alr | TsaE | Lisr_0195 | Lisr_2684 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | ATPase or kinase. | 0.504 |
alr | amiB | Lisr_0195 | Lisr_2685 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | N-acetylmuramoyl-L-alanine amidase. | 0.401 |
amiB | TsaE | Lisr_2685 | Lisr_2684 | N-acetylmuramoyl-L-alanine amidase. | ATPase or kinase. | 0.866 |
amiB | alr | Lisr_2685 | Lisr_0195 | N-acetylmuramoyl-L-alanine amidase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.401 |
amiB | miaA | Lisr_2685 | Lisr_2687 | N-acetylmuramoyl-L-alanine amidase. | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.869 |
amiB | mutL | Lisr_2685 | Lisr_2686 | N-acetylmuramoyl-L-alanine amidase. | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.870 |
amiB | sspA | Lisr_2685 | Lisr_2681 | N-acetylmuramoyl-L-alanine amidase. | Stringent starvation protein A; Belongs to the GST superfamily. | 0.623 |
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