STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A3L6PDF7Putative 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic isoform X1. (637 aa)    
Predicted Functional Partners:
A0A3L6PGJ2
Uncharacterized protein.
  
 0.969
A0A3L6S2W5
Uncharacterized protein.
  
 0.969
A0A3L6R6P9
1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic.
  
 
 0.966
A0A3L6SHJ5
1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic.
  
 
 0.966
A0A3L6PM06
Uncharacterized protein.
  
 0.941
A0A3L6PNW7
Uncharacterized protein.
  
 0.941
A0A3L6RGG8
Transaldolase.
  
 0.941
A0A3L6ST45
Transaldolase.
  
 0.941
A0A3L6QS63
Putative 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic.
  
  
 
0.896
A0A3L6REF4
1-deoxy-D-xylulose-5-phosphate synthase.
  
  
 
0.896
Your Current Organism:
Panicum miliaceum
NCBI taxonomy Id: 4540
Other names: P. miliaceum, Panicum miliaceum L., broom millet, common millet, proso millet
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