A0A3L6SKX4 protein (Panicum miliaceum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A3L6SKX4

V-SNARE domain-containing protein. (221 aa)

Predicted Functional Partners:

A0A3L6PCN2

0.990

A0A3L6S015

0.990

A0A3L6RE57

0.989

A0A3L6SLG1

0.989

A0A3L6PK88

0.986

A0A3L6RII7

0.986

A0A3L6SQQ4

0.986

A0A3L6PH29

0.975

A0A3L6PLG1

0.975

A0A3L6SNP7

0.975

Your Current Organism:

Panicum miliaceum

NCBI taxonomy Id: 4540
Other names: P. miliaceum, Panicum miliaceum L., broom millet, common millet, proso millet

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A3L6PCN2	A0A3L6PH29	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.988
A0A3L6PCN2	A0A3L6PK88	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	VAMP-like protein YKT62.	0.965
A0A3L6PCN2	A0A3L6PLG1	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	Syntaxin-61.	0.988
A0A3L6PCN2	A0A3L6RE57	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	t-SNARE coiled-coil homology domain-containing protein.	0.988
A0A3L6PCN2	A0A3L6RII7	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	VAMP-like protein YKT61; Belongs to the synaptobrevin family.	0.965
A0A3L6PCN2	A0A3L6SKX4	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	V-SNARE domain-containing protein.	0.990
A0A3L6PCN2	A0A3L6SLG1	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.965
A0A3L6PCN2	A0A3L6SNP7	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	Syntaxin-61.	0.988
A0A3L6PCN2	A0A3L6SQQ4	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	VAMP-like protein YKT61; Belongs to the synaptobrevin family.	0.965
A0A3L6PH29	A0A3L6PCN2	t-SNARE coiled-coil homology domain-containing protein.	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	0.988
A0A3L6PH29	A0A3L6PK88	t-SNARE coiled-coil homology domain-containing protein.	VAMP-like protein YKT62.	0.964
A0A3L6PH29	A0A3L6RE57	t-SNARE coiled-coil homology domain-containing protein.	t-SNARE coiled-coil homology domain-containing protein.	0.538
A0A3L6PH29	A0A3L6RII7	t-SNARE coiled-coil homology domain-containing protein.	VAMP-like protein YKT61; Belongs to the synaptobrevin family.	0.964
A0A3L6PH29	A0A3L6S015	t-SNARE coiled-coil homology domain-containing protein.	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	0.988
A0A3L6PH29	A0A3L6SKX4	t-SNARE coiled-coil homology domain-containing protein.	V-SNARE domain-containing protein.	0.975
A0A3L6PH29	A0A3L6SLG1	t-SNARE coiled-coil homology domain-containing protein.	Uncharacterized protein; Belongs to the synaptobrevin family.	0.964
A0A3L6PH29	A0A3L6SQQ4	t-SNARE coiled-coil homology domain-containing protein.	VAMP-like protein YKT61; Belongs to the synaptobrevin family.	0.964
A0A3L6PK88	A0A3L6PCN2	VAMP-like protein YKT62.	Syntaxin-43-like isoform X1; Belongs to the syntaxin family.	0.965
A0A3L6PK88	A0A3L6PH29	VAMP-like protein YKT62.	t-SNARE coiled-coil homology domain-containing protein.	0.964
A0A3L6PK88	A0A3L6PLG1	VAMP-like protein YKT62.	Syntaxin-61.	0.964