STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF12551.1Uncharacterized membrane protein YcaP, DUF421 family. (228 aa)    
Predicted Functional Partners:
SDF12593.1
Hypothetical protein.
       0.615
SDF12626.1
Hypothetical protein.
       0.615
SDF12666.1
GMP synthase-Glutamine amidotransferase.
       0.446
SDF12712.1
Plasmid stabilization system protein ParE.
       0.446
SDF12751.1
Hypothetical protein.
       0.446
SDG21887.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
  
     0.415
Your Current Organism:
Chryseobacterium hungaricum
NCBI taxonomy Id: 454006
Other names: C. hungaricum, Chryseobacterium hungaricum Szoboszlay et al. 2008, DSM 19684, NCAIM B2269, strain CHB-20p
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.