STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF29173.1T/G mismatch-specific endonuclease; May nick specific sequences that contain T:G mispairs resulting from m5C-deamination. (147 aa)    
Predicted Functional Partners:
SDF29042.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 
 0.948
SDF29131.1
DNA (cytosine-5)-methyltransferase 1.
 
   
 0.932
SDF28997.1
Z1 domain-containing protein.
 
     0.908
SDF28946.1
Putative PD-(D/E)XK family member.
 
     0.905
SDF28897.1
AIPR protein.
 
     0.897
SDF28849.1
Hypothetical protein.
       0.773
SDF29087.1
Hypothetical protein.
       0.773
SDG64343.1
DNA (cytosine-5)-methyltransferase 1.
 
   
 0.738
SDF28807.1
Fic family protein.
       0.623
mutL
DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
   
 
 0.546
Your Current Organism:
Chryseobacterium hungaricum
NCBI taxonomy Id: 454006
Other names: C. hungaricum, Chryseobacterium hungaricum Szoboszlay et al. 2008, DSM 19684, NCAIM B2269, strain CHB-20p
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.