STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF55881.1Hypothetical protein; Belongs to the UPF0246 family. (253 aa)    
Predicted Functional Partners:
SDF56114.1
Release factor glutamine methyltransferase.
       0.785
SDF55835.1
tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family; Belongs to the SUA5 family.
 
     0.623
SDG10791.1
tRNA U34 5-methylaminomethyl-2-thiouridine-forming methyltransferase MnmC.
 
     0.418
Your Current Organism:
Chryseobacterium hungaricum
NCBI taxonomy Id: 454006
Other names: C. hungaricum, Chryseobacterium hungaricum Szoboszlay et al. 2008, DSM 19684, NCAIM B2269, strain CHB-20p
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.