STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG11600.123S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. (339 aa)    
Predicted Functional Partners:
der
GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.863
SDG10278.1
Pyruvate/2-oxoglutarate/acetoin dehydrogenase complex, dehydrogenase (E1) component.
    
  0.764
cmk
Cytidylate kinase.
 
  
 0.694
SDF79036.1
2-oxoisovalerate dehydrogenase E1 component.
    
  0.652
SDG11559.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.639
SDF05013.1
Endonuclease/Exonuclease/phosphatase family protein.
  
    0.623
SDG54533.1
Exodeoxyribonuclease-3.
  
    0.623
SDG11635.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
       0.547
SDF06147.1
23S rRNA pseudouridine1911/1915/1917 synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
 
 0.531
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
   
 0.471
Your Current Organism:
Chryseobacterium hungaricum
NCBI taxonomy Id: 454006
Other names: C. hungaricum, Chryseobacterium hungaricum Szoboszlay et al. 2008, DSM 19684, NCAIM B2269, strain CHB-20p
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.