SDG44444.1 protein (Chryseobacterium hungaricum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDG44444.1

Por secretion system C-terminal sorting domain-containing protein. (1370 aa)

Predicted Functional Partners:

SDE82299.1

0.707

SDF87365.1

0.688

SDE95431.1

0.606

SDF76340.1

0.603

SDE97902.1

0.597

SDF87406.1

0.582

SDG05859.1

0.566

SDG41248.1

0.539

SDF54209.1

0.536

rsmG

0.513

Your Current Organism:

Chryseobacterium hungaricum

NCBI taxonomy Id: 454006
Other names: C. hungaricum, Chryseobacterium hungaricum Szoboszlay et al. 2008, DSM 19684, NCAIM B2269, strain CHB-20p

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDE82299.1	SDE95431.1	SAMN05421825_0307	SAMN05421825_0686	Por secretion system C-terminal sorting domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.644
SDE82299.1	SDF76340.1	SAMN05421825_0307	SAMN05421825_2054	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.587
SDE82299.1	SDG44444.1	SAMN05421825_0307	SAMN05421825_3375	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.707
SDE95431.1	SDE82299.1	SAMN05421825_0686	SAMN05421825_0307	Gliding motility-associated C-terminal domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.644
SDE95431.1	SDE97902.1	SAMN05421825_0686	SAMN05421825_0748	Gliding motility-associated C-terminal domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.609
SDE95431.1	SDF54209.1	SAMN05421825_0686	SAMN05421825_1619	Gliding motility-associated C-terminal domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.632
SDE95431.1	SDF76340.1	SAMN05421825_0686	SAMN05421825_2054	Gliding motility-associated C-terminal domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.533
SDE95431.1	SDF87365.1	SAMN05421825_0686	SAMN05421825_2343	Gliding motility-associated C-terminal domain-containing protein.	Exosortase F-associated protein.	0.563
SDE95431.1	SDF87406.1	SAMN05421825_0686	SAMN05421825_2344	Gliding motility-associated C-terminal domain-containing protein.	Exosortase family protein XrtF.	0.474
SDE95431.1	SDG05859.1	SAMN05421825_0686	SAMN05421825_2558	Gliding motility-associated C-terminal domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein; Belongs to the peptidase S8 family.	0.589
SDE95431.1	SDG41248.1	SAMN05421825_0686	SAMN05421825_3283	Gliding motility-associated C-terminal domain-containing protein.	Peptidase family S41.	0.730
SDE95431.1	SDG44444.1	SAMN05421825_0686	SAMN05421825_3375	Gliding motility-associated C-terminal domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.606
SDE97902.1	SDE95431.1	SAMN05421825_0748	SAMN05421825_0686	Por secretion system C-terminal sorting domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.609
SDE97902.1	SDF87365.1	SAMN05421825_0748	SAMN05421825_2343	Por secretion system C-terminal sorting domain-containing protein.	Exosortase F-associated protein.	0.448
SDE97902.1	SDF87406.1	SAMN05421825_0748	SAMN05421825_2344	Por secretion system C-terminal sorting domain-containing protein.	Exosortase family protein XrtF.	0.443
SDE97902.1	SDG05859.1	SAMN05421825_0748	SAMN05421825_2558	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein; Belongs to the peptidase S8 family.	0.413
SDE97902.1	SDG44444.1	SAMN05421825_0748	SAMN05421825_3375	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.597
SDF54209.1	SDE95431.1	SAMN05421825_1619	SAMN05421825_0686	Por secretion system C-terminal sorting domain-containing protein.	Gliding motility-associated C-terminal domain-containing protein.	0.632
SDF54209.1	SDF76340.1	SAMN05421825_1619	SAMN05421825_2054	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.405
SDF54209.1	SDG44444.1	SAMN05421825_1619	SAMN05421825_3375	Por secretion system C-terminal sorting domain-containing protein.	Por secretion system C-terminal sorting domain-containing protein.	0.536