ASPCAL13632 protein (Aspergillus calidoustus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ASPCAL13632

Peptidase_S9 domain-containing protein. (644 aa)

Predicted Functional Partners:

ASPCAL01208

0.651

ASPCAL00603

0.651

ASPCAL11771

0.651

ASPCAL08979

0.630

Your Current Organism:

Aspergillus calidoustus

NCBI taxonomy Id: 454130
Other names: A. calidoustus, Aspergillus calidoustus Varga, Houbraken & Samson 2008, Aspergillus sp. JV-2007c, CBS 121601

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASPCAL00603	ASPCAL13632	A0A0U5FP12	A0A0U5GDW2	NACHT domain-containing protein.	Peptidase_S9 domain-containing protein.	0.651
ASPCAL01208	ASPCAL13632	A0A0U5C2F8	A0A0U5GDW2	Putative Leucine rich repeat protein.	Peptidase_S9 domain-containing protein.	0.651
ASPCAL08979	ASPCAL13632	A0A0U5GTZ4	A0A0U5GDW2	Putative Ubiquitin-like modifier SUMO.	Peptidase_S9 domain-containing protein.	0.630
ASPCAL11771	ASPCAL13632	A0A0U5GFK6	A0A0U5GDW2	NACHT domain-containing protein.	Peptidase_S9 domain-containing protein.	0.651
ASPCAL13632	ASPCAL00603	A0A0U5GDW2	A0A0U5FP12	Peptidase_S9 domain-containing protein.	NACHT domain-containing protein.	0.651
ASPCAL13632	ASPCAL01208	A0A0U5GDW2	A0A0U5C2F8	Peptidase_S9 domain-containing protein.	Putative Leucine rich repeat protein.	0.651
ASPCAL13632	ASPCAL08979	A0A0U5GDW2	A0A0U5GTZ4	Peptidase_S9 domain-containing protein.	Putative Ubiquitin-like modifier SUMO.	0.630
ASPCAL13632	ASPCAL11771	A0A0U5GDW2	A0A0U5GFK6	Peptidase_S9 domain-containing protein.	NACHT domain-containing protein.	0.651