STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASPCAL02037Putative RNP domain protein. (346 aa)    
Predicted Functional Partners:
ASPCAL02038
Putative Function: TOM34.
 
      0.900
ASPCAL11088
Putative Pre-RNA splicing factor Srp2.
    
 0.877
ASPCAL00474
Nuclear cap-binding protein subunit 2.
    
 0.760
ASPCAL05865
Putative Alpha-actinin, sarcomeric.
  
 
 0.714
ASPCAL04694
Putative RNA annealing protein Yra1.
   
 0.702
ASPCAL01164
Putative Nuclear cap-binding complex.
    
 0.699
ASPCAL12172
Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.
    
 0.671
ASPCAL06432
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.665
ASPCAL05504
Putative RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex.
  
 
 0.651
ASPCAL12726
Putative RNA polymerase subunit (AFU_orthologue AFUA_1G14110).
   
  0.620
Your Current Organism:
Aspergillus calidoustus
NCBI taxonomy Id: 454130
Other names: A. calidoustus, Aspergillus calidoustus Varga, Houbraken & Samson 2008, Aspergillus sp. JV-2007c, CBS 121601
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.