STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASPCAL14814Putative Reverse transcriptase. (1257 aa)    
Predicted Functional Partners:
ASPCAL11006
Putative 60S ribosomal protein L21-A.
   
   0.672
ASPCAL00007
Uncharacterized protein.
    
 0.668
ASPCAL10959
Putative LYR family protein; Belongs to the complex I LYR family.
    
 0.668
ASPCAL13074
Putative 60S ribosomal protein L2.
   
 
 0.616
ASPCAL03649
Putative Ankyrin repeat protein nuc-2.
    
 0.615
ASPCAL13105
Putative 60S ribosomal protein L39.
   
   0.609
ASPCAL02457
Putative Ribosomal protein L16a.
   
   0.609
ASPCAL12195
Putative Strain CBS138 chromosome G complete sequence.
    
  0.601
ASPCAL02140
Putative 50S ribosomal protein L2 (AFU_orthologue AFUA_4G12170).
   
 
 0.601
ASPCAL00812
Putative 50S ribosomal protein L13 (AFU_orthologue AFUA_2G10510).
   
   0.577
Your Current Organism:
Aspergillus calidoustus
NCBI taxonomy Id: 454130
Other names: A. calidoustus, Aspergillus calidoustus Varga, Houbraken & Samson 2008, Aspergillus sp. JV-2007c, CBS 121601
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