STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OKH18856.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (920 aa)    
Predicted Functional Partners:
OKH18952.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.763
OKH19908.1
Group 1 glycosyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
OKH18953.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.618
OKH15930.1
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.555
OKH16038.1
Alpha-amylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.545
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
  0.545
OKH10857.1
Mannose-1-phosphate guanylyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.539
OKH12954.1
Glucosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.519
OKH18912.1
Glycoside hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
OKH13448.1
UDP-glucose 4-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.471
Your Current Organism:
Limnothrix rosea
NCBI taxonomy Id: 454133
Other names: L. rosea IAM M-220, Limnothrix rosea IAM M-220, Oscillatoria rosea IAM M-220, Oscillatoria rosea NGS-1, Oscillatoria rosea NIES-208
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.