STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK12476.1PFAM: Glycosyl transferase family 21; TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; JGI identifier:CP488_00044. (390 aa)    
Predicted Functional Partners:
CEK12820.1
Predicted bile acid beta-glucosidase; PFAM: beta-Glucocerebrosidase 2 N terminal; Protein of unknown function, DUF608; JGI identifier:CP488_00218.
    
  0.901
CEK14515.1
Predicted bile acid beta-glucosidase; PFAM: beta-Glucocerebrosidase 2 N terminal; Protein of unknown function, DUF608; JGI identifier:CP488_00863.
    
  0.901
CEK12901.1
PFAM: Neutral/alkaline non-lysosomal ceramidase; JGI identifier:CP488_00259.
     
 0.900
CEK14785.1
PFAM: Neutral/alkaline non-lysosomal ceramidase; JGI identifier:CP488_00948.
     
 0.900
CEK16508.1
Beta-galactosidase/beta-glucuronidase; PFAM: Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2; Glycosyl hydrolases family 2, sugar binding domain; JGI identifier:CP488_01530; Belongs to the glycosyl hydrolase 2 family.
     
  0.900
CEK19414.1
Beta-galactosidase/beta-glucuronidase; PFAM: Glycosyl hydrolases family 2, TIM barrel domain; Glycosyl hydrolases family 2; Glycosyl hydrolases family 2, sugar binding domain; JGI identifier:CP488_02514; Belongs to the glycosyl hydrolase 2 family.
     
  0.900
CEK19049.1
PFAM: Radical SAM superfamily; B12 binding domain; TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; JGI identifier:CP488_02388.
   
 0.899
CEK19047.1
PFAM: YdjC-like protein; TIGRFAM: hopanoid biosynthesis associated protein HpnK; JGI identifier:CP488_02387.
 
   
 0.786
CEK12478.1
Predicted membrane protein; PFAM: EamA-like transporter family; JGI identifier:CP488_00045.
       0.775
CEK12480.1
PFAM: Inositol monophosphatase family; JGI identifier:CP488_00046.
       0.773
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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