STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK12490.1Transcriptional regulator, LacI family; PFAM: Bacterial regulatory proteins, gntR family; Periplasmic binding protein-like domain; JGI identifier:CP488_00053. (395 aa)    
Predicted Functional Partners:
CEK12969.1
PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding protein-like domain; JGI identifier:CP488_00293.
  
   
 0.776
CEK15456.1
PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding protein-like domain; JGI identifier:CP488_01176.
  
   
 0.776
CEK17396.1
PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding protein-like domain; JGI identifier:CP488_01838.
  
   
 0.776
CEK18098.1
PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding protein-like domain; JGI identifier:CP488_02067.
  
   
 0.776
CEK20303.1
PFAM: Bacterial regulatory proteins, gntR family; Periplasmic binding protein-like domain; JGI identifier:CP488_02812.
  
   
 0.775
CEK12488.1
PFAM: Type IV pilin N-term methylation site GFxxxE; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_00052.
       0.773
CEK19196.1
PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II; JGI identifier:CP488_02439.
   
 
 0.753
CEK13931.1
PFAM: Amidohydrolase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; JGI identifier:CP488_00668.
  
  
 0.705
CEK12487.1
Hypothetical protein; JGI identifier:CP488_00051.
       0.693
CEK15889.1
Hypothetical protein; PFAM: Cupin domain; JGI identifier:CP488_01321.
  
  
 0.668
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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