STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK12515.1PFAM: Glutathione peroxidase; JGI identifier:CP488_00065; Belongs to the glutathione peroxidase family. (270 aa)    
Predicted Functional Partners:
CEK12544.1
PFAM: Gamma-glutamyltranspeptidase; TIGRFAM: gamma-glutamyltranspeptidase; JGI identifier:CP488_00080.
     
 0.919
CEK17546.1
PFAM: Catalase; Catalase-related immune-responsive; JGI identifier:CP488_01887.
  
 
 0.531
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
 
 0.497
CEK20395.1
Thiol-disulfide isomerase-like thioredoxin; PFAM: Redoxin; JGI identifier:CP488_02842.
  
 0.483
CEK12513.1
PFAM: Uncharacterized metal-binding protein (DUF2227); JGI identifier:CP488_00064.
       0.463
CEK19857.1
Glutaredoxin-like protein; PFAM: Glutaredoxin; JGI identifier:CP488_02662.
  
 
 0.433
msrA
methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
 
 0.409
CEK19278.1
Zn-dependent hydrolase, glyoxylase; PFAM: Metallo-beta-lactamase superfamily; Rhodanese-like domain; JGI identifier:CP488_02469.
  
  
 0.400
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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