STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK12537.1PFAM: Protein phosphatase 2C; JGI identifier:CP488_00076. (501 aa)    
Predicted Functional Partners:
CEK13096.1
PFAM: Protein kinase domain; PASTA domain; JGI identifier:CP488_00358.
 
 0.980
CEK12534.1
PFAM: Protein kinase domain; JGI identifier:CP488_00075.
 
 0.961
CEK19378.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; JGI identifier:CP488_02502.
   
 0.895
CEK20290.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component beta subunit; PFAM: Dehydrogenase E1 component; Transketolase, C-terminal domain; Transketolase, pyrimidine binding domain; JGI identifier:CP488_02808.
   
 0.895
CEK19874.1
PFAM: Protein kinase domain; JGI identifier:CP488_02668.
 
 0.837
CEK13463.1
PFAM: Protein kinase domain; JGI identifier:CP488_00507.
 
 
 0.836
CEK19315.1
PFAM: Protein kinase domain; JGI identifier:CP488_02481.
 
 0.836
CEK12540.1
PFAM: Protein of unknown function (DUF2662); FHA domain; JGI identifier:CP488_00078.
 
  
 0.738
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.720
CEK18899.1
FHA domain-containing protein; PFAM: FHA domain; JGI identifier:CP488_02339.
 
  
 0.655
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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