STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK12550.1Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel; JGI identifier:CP488_00083. (262 aa)    
Predicted Functional Partners:
CEK14561.1
Sugar phosphate isomerase/epimerase; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel; JGI identifier:CP488_00878.
  
     0.678
CEK12675.1
Predicted dehydrogenase; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold; JGI identifier:CP488_00145.
  
    0.659
CEK19087.1
Sugar phosphate isomerase/epimerase; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel; JGI identifier:CP488_02401.
  
     0.632
CEK14928.1
PFAM: Xylose isomerase-like TIM barrel; JGI identifier:CP488_00996; Belongs to the hyi family.
 
     0.619
CEK16212.1
Trehalose utilization protein; PFAM: Trehalose utilisation; JGI identifier:CP488_01430.
 
     0.583
CEK13970.1
Trehalose utilization protein; PFAM: Trehalose utilisation; JGI identifier:CP488_00681.
 
     0.576
CEK18920.1
Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; JGI identifier:CP488_02346.
  
    0.553
CEK13897.1
Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase family; JGI identifier:CP488_00656.
  
     0.531
CEK13288.1
PFAM: Domain of Unknown Function (DUF1080); JGI identifier:CP488_00450.
  
     0.509
CEK17251.1
PFAM: Domain of Unknown Function (DUF1080); JGI identifier:CP488_01789.
  
     0.503
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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