STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
tilStRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family. (495 aa)    
Predicted Functional Partners:
CEK14101.1
PFAM: Phosphoribosyl transferase domain; TIGRFAM: hypoxanthine phosphoribosyltransferase; JGI identifier:CP488_00725; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
  
 0.947
CEK12393.1
Chromosomal replication initiator protein DnaA; PFAM: DnaA N-terminal domain; Bacterial dnaA protein helix-turn-helix; Bacterial dnaA protein; TIGRFAM: chromosomal replication initiator protein DnaA; JGI identifier:CP488_00001; Belongs to the DnaA family.
    
 0.830
CEK13792.1
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: ThiS family; MoeZ/MoeB domain; Rhodanese-like domain; ThiF family; JGI identifier:CP488_00621.
  
 
 0.786
CEK12609.1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component; PFAM: Binding-protein-dependent transport system inner membrane component; JGI identifier:CP488_00112.
       0.778
CEK12614.1
ABC-type uncharacterized transport system, duplicated ATPase component; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; JGI identifier:CP488_00115; Belongs to the ABC transporter superfamily.
       0.778
CEK12611.1
PFAM: Binding-protein-dependent transport system inner membrane component; N-terminal TM domain of oligopeptide transport permease C; JGI identifier:CP488_00113.
       0.777
CEK12613.1
PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; JGI identifier:CP488_00114; Belongs to the ABC transporter superfamily.
       0.776
CEK19205.1
PFAM: ThiS family; TIGRFAM: thiamine biosynthesis protein ThiS; JGI identifier:CP488_02443.
  
 
 0.774
CEK12607.1
ABC-type oligopeptide transport system, periplasmic component; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle; JGI identifier:CP488_00111.
       0.773
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
 
  
 0.756
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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