STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK12662.1Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2; JGI identifier:CP488_00139. (327 aa)    
Predicted Functional Partners:
CEK12660.1
Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2; JGI identifier:CP488_00138.
 
    
0.810
CEK12664.1
Lipid A core-O-antigen ligase-like enyme; PFAM: TPR repeat; Tetratricopeptide repeat; O-Antigen ligase; JGI identifier:CP488_00140.
  
  
 0.804
CEK16262.1
PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; JGI identifier:CP488_01449.
 
  
 0.804
CEK18220.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1; JGI identifier:CP488_02108.
 
    0.782
CEK13558.1
Flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN; JGI identifier:CP488_00539.
    
   0.722
CEK14874.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.663
CEK12658.1
PFAM: D-alanyl-D-alanine carboxypeptidase; JGI identifier:CP488_00137; Belongs to the peptidase S11 family.
       0.516
CEK17655.1
PFAM: Riboflavin kinase; FAD synthetase; TIGRFAM: riboflavin kinase/FMN adenylyltransferase; JGI identifier:CP488_01923; Belongs to the ribF family.
 
      0.516
CEK12945.1
Hypothetical protein; JGI identifier:CP488_00281.
 
     0.503
CEK20343.1
PFAM: AAA domain; Chain length determinant protein; TIGRFAM: capsular exopolysaccharide family; JGI identifier:CP488_02825.
  
  
 0.402
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.