STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK12737.1PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS; JGI identifier:CP488_00176. (383 aa)    
Predicted Functional Partners:
CEK13588.1
PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family; JGI identifier:CP488_00549.
  
 0.987
CEK13792.1
Dinucleotide-utilizing enzyme possibly involved in molybdopterin or thiamin biosynthesis; PFAM: ThiS family; MoeZ/MoeB domain; Rhodanese-like domain; ThiF family; JGI identifier:CP488_00621.
   
 0.981
CEK15870.1
Rhodanese-related sulfurtransferase; PFAM: Rhodanese-like domain; JGI identifier:CP488_01315.
   
 0.916
CEK20272.1
PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS; JGI identifier:CP488_02802.
  
  
 
0.905
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
    
 0.893
CEK13408.1
Ferredoxin; PFAM: 2Fe-2S iron-sulfur cluster binding domain; JGI identifier:CP488_00489.
  
 0.819
CEK17234.1
PFAM: Uncharacterized conserved protein (DUF2249); Domain of unknown function (DUF1858); JGI identifier:CP488_01783.
   
 
 0.795
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 
 0.756
CEK13595.1
PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; JGI identifier:CP488_00551; Belongs to the HesB/IscA family.
 
  
 0.657
CEK13050.1
PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; JGI identifier:CP488_00335; Belongs to the HesB/IscA family.
 
  
 0.647
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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