STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK12864.1PFAM: TPR repeat; Tetratricopeptide repeat; JGI identifier:CP488_00241. (407 aa)    
Predicted Functional Partners:
CEK20012.1
Tetratricopeptide repeat protein; PFAM: Glycosyltransferase family 9 (heptosyltransferase); Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_02715.
 
 
 0.872
CEK12862.1
Hypothetical protein; PFAM: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; ASPIC and UnbV; JGI identifier:CP488_00240.
   
   0.793
CEK12858.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00238.
 
 
0.792
CEK12947.1
PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00282.
 
 
 0.782
CEK17702.1
WD40 repeat-containing protein; PFAM: WD domain, G-beta repeat; TPR repeat; Ankyrin repeat; Ankyrin repeats (3 copies); JGI identifier:CP488_01938.
  
 
   0.765
CEK12860.1
Cytochrome c biogenesis factor; PFAM: TPR repeat; JGI identifier:CP488_00239.
 
    
0.733
CEK12856.1
Hypothetical protein; PFAM: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; ASPIC and UnbV; JGI identifier:CP488_00237.
   
   0.581
CEK13318.1
PFAM: TPR repeat; JGI identifier:CP488_00459.
 
     0.579
CEK17825.1
PFAM: TPR repeat; JGI identifier:CP488_01978.
 
 
0.566
CEK16218.1
PFAM: Tetratricopeptide repeat; JGI identifier:CP488_01432.
 
 
0.559
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.