STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK12901.1PFAM: Neutral/alkaline non-lysosomal ceramidase; JGI identifier:CP488_00259. (428 aa)    
Predicted Functional Partners:
CEK14785.1
PFAM: Neutral/alkaline non-lysosomal ceramidase; JGI identifier:CP488_00948.
  
  
 
0.929
CEK12476.1
PFAM: Glycosyl transferase family 21; TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; JGI identifier:CP488_00044.
     
 0.900
CEK12820.1
Predicted bile acid beta-glucosidase; PFAM: beta-Glucocerebrosidase 2 N terminal; Protein of unknown function, DUF608; JGI identifier:CP488_00218.
     
  0.900
CEK14515.1
Predicted bile acid beta-glucosidase; PFAM: beta-Glucocerebrosidase 2 N terminal; Protein of unknown function, DUF608; JGI identifier:CP488_00863.
     
  0.900
CEK13931.1
PFAM: Amidohydrolase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; JGI identifier:CP488_00668.
  
 
 0.758
CEK13764.1
PFAM: Acetyl xylan esterase (AXE1); JGI identifier:CP488_00612.
  
     0.721
CEK13698.1
Hypothetical protein; JGI identifier:CP488_00589.
  
     0.715
CEK18518.1
PFAM: Methane oxygenase PmoA; JGI identifier:CP488_02212.
  
     0.712
CEK17303.1
Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel; JGI identifier:CP488_01807.
  
     0.696
CEK14899.1
PFAM: Methane oxygenase PmoA; JGI identifier:CP488_00986.
  
     0.688
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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