STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK12971.1PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_00294. (276 aa)    
Predicted Functional Partners:
CEK12969.1
PFAM: Bacterial regulatory proteins, lacI family; Periplasmic binding protein-like domain; JGI identifier:CP488_00293.
       0.581
CEK12973.1
Tfp pilus assembly protein PilF; PFAM: Tetratricopeptide repeat; TPR repeat; JGI identifier:CP488_00295.
  
    0.568
CEK12975.1
Hypothetical protein; JGI identifier:CP488_00296.
       0.523
CEK12977.1
Hypothetical protein; PFAM: Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella; ASPIC and UnbV; JGI identifier:CP488_00297.
       0.523
CEK20487.1
PFAM: Prokaryotic N-terminal methylation motif; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_02873.
  
   
0.509
CEK20161.1
PFAM: Type IV pilin N-term methylation site GFxxxE; Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_02765.
  
   
0.504
CEK16221.1
PFAM: Protein of unknown function (DUF1559); TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; prepilin-type processing-associated H-X9-DG domain; JGI identifier:CP488_01433.
  
   
0.502
CEK14826.1
Type II secretory pathway, component PulK; PFAM: Helix-hairpin-helix motif; Type II secretion system (T2SS), protein K; JGI identifier:CP488_00962.
 
 
 0.477
CEK14824.1
Tfp pilus assembly protein, ATPase PilM; PFAM: Fimbrial assembly protein (PilN); JGI identifier:CP488_00961.
  
     0.444
CEK12967.1
Hypothetical protein; JGI identifier:CP488_00292.
       0.402
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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