STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK13516.1PFAM: Periplasmic binding protein domain; JGI identifier:CP488_00525. (350 aa)    
Predicted Functional Partners:
CEK13513.1
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component; JGI identifier:CP488_00524; Belongs to the binding-protein-dependent transport system permease family.
 
 0.995
CEK13134.1
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component; JGI identifier:CP488_00378; Belongs to the binding-protein-dependent transport system permease family.
 
 0.977
CEK14802.1
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component; JGI identifier:CP488_00954; Belongs to the binding-protein-dependent transport system permease family.
 
 0.977
CEK18924.1
Ribose ABC transporter membrane protein; PFAM: Branched-chain amino acid transport system / permease component; JGI identifier:CP488_02347; Belongs to the binding-protein-dependent transport system permease family.
 
 0.976
CEK12590.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; Hpt domain; PAS fold; TIGRFAM: PAS domain S-box; JGI identifier:CP488_00103.
  
 
 0.963
CEK13552.1
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component; JGI identifier:CP488_00537; Belongs to the binding-protein-dependent transport system permease family.
 
 0.959
CEK15173.1
PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phospho-acceptor) domain; PAS domain; PAS fold; TIGRFAM: PAS domain S-box; JGI identifier:CP488_01078.
   
 
 0.955
CEK13549.1
Monosaccharide ABC transporter membrane protein, CUT2 family; PFAM: Branched-chain amino acid transport system / permease component; JGI identifier:CP488_00536; Belongs to the binding-protein-dependent transport system permease family.
 
 0.951
CEK13285.1
Histidine kinase with GAF domain; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; GAF domain; His Kinase A (phospho-acceptor) domain; JGI identifier:CP488_00449.
   
 
 0.949
rbsA
ABC-type sugar transport system, ATPase component; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 
 0.917
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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