STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK13573.1PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein; JGI identifier:CP488_00544. (164 aa)    
Predicted Functional Partners:
CEK13588.1
PFAM: NifU-like N terminal domain; TIGRFAM: SUF system FeS assembly protein, NifU family; JGI identifier:CP488_00549.
  
  
 0.805
CEK13576.1
Iron-regulated ABC transporter membrane component SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB; JGI identifier:CP488_00545.
     
 0.717
CEK13579.1
PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC; JGI identifier:CP488_00546.
     
 0.643
CEK12737.1
PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS; JGI identifier:CP488_00176.
  
  
 0.620
CEK20272.1
PFAM: Aminotransferase class-V; TIGRFAM: cysteine desulfurase NifS; JGI identifier:CP488_02802.
  
  
 0.620
CEK13584.1
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
       0.618
CEK13582.1
Iron-regulated ABC transporter permease protein SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD; JGI identifier:CP488_00547.
     
 0.616
CEK13591.1
FeS assembly SUF system protein; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein; JGI identifier:CP488_00550.
       0.587
CEK13595.1
PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; JGI identifier:CP488_00551; Belongs to the HesB/IscA family.
  
  
 0.567
CEK14766.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor; PFAM: 4Fe-4S dicluster domain; JGI identifier:CP488_00942.
  
  
 0.408
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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