STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK13897.1Lysophospholipase L1-like esterase; PFAM: GDSL-like Lipase/Acylhydrolase family; JGI identifier:CP488_00656. (252 aa)    
Predicted Functional Partners:
CEK19369.1
PFAM: Right handed beta helix region; JGI identifier:CP488_02499.
   
 
 0.614
CEK13894.1
DNA-binding ferritin-like protein (oxidative damage protectant); PFAM: Ferritin-like domain; JGI identifier:CP488_00655; Belongs to the Dps family.
       0.567
CEK12550.1
Sugar phosphate isomerase/epimerase; PFAM: Xylose isomerase-like TIM barrel; JGI identifier:CP488_00083.
  
     0.531
CEK18069.1
PFAM: Acetyl xylan esterase (AXE1); JGI identifier:CP488_02057.
 
     0.478
CEK14417.1
PFAM: Putative esterase; JGI identifier:CP488_00831.
  
   
 0.423
CEK20087.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase component; PFAM: FAD dependent oxidoreductase; JGI identifier:CP488_02741.
  
     0.417
CEK20266.1
PFAM: Domain of unknown function (DUF4380); JGI identifier:CP488_02800.
  
     0.410
CEK14807.1
PFAM: Putative esterase; JGI identifier:CP488_00956.
  
   
 0.407
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.