STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK13989.1Uncharacterized membrane protein; PFAM: MgtC family; JGI identifier:CP488_00687. (239 aa)    
Predicted Functional Partners:
CEK13991.1
Enoyl-(acyl-carrier-protein) reductase (NADH); PFAM: Enoyl-(Acyl carrier protein) reductase; JGI identifier:CP488_00688.
       0.570
CEK13995.1
Alanine-glyoxylate aminotransferase apoenzyme; PFAM: Aminotransferase class-V; JGI identifier:CP488_00689.
       0.539
CEK13985.1
PFAM: Radical SAM superfamily; Uncharacterized protein family UPF0004; TIGRFAM: radical SAM methylthiotransferase, MiaB/RimO family; JGI identifier:CP488_00686.
       0.521
CEK13982.1
PFAM: Protein of unknown function (DUF1343); JGI identifier:CP488_00685.
       0.512
CEK13998.1
Hypothetical protein; JGI identifier:CP488_00690.
       0.472
CEK20263.1
Competence/damage-inducible protein cinA; PFAM: Probable molybdopterin binding domain; Competence-damaged protein; TIGRFAM: competence/damage-inducible protein CinA N-terminal domain; competence/damage-inducible protein CinA C-terminal domain; molybdenum cofactor synthesis domain; JGI identifier:CP488_02799.
  
  
 0.466
CEK15334.1
Flagellar biosynthesis pathway, component FliR; PFAM: Bacterial export proteins, family 1; TIGRFAM: flagellar biosynthetic protein FliR; JGI identifier:CP488_01133.
    
   0.463
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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