STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK13998.1Hypothetical protein; JGI identifier:CP488_00690. (324 aa)    
Predicted Functional Partners:
CEK13995.1
Alanine-glyoxylate aminotransferase apoenzyme; PFAM: Aminotransferase class-V; JGI identifier:CP488_00689.
       0.668
CEK13991.1
Enoyl-(acyl-carrier-protein) reductase (NADH); PFAM: Enoyl-(Acyl carrier protein) reductase; JGI identifier:CP488_00688.
       0.629
CEK13989.1
Uncharacterized membrane protein; PFAM: MgtC family; JGI identifier:CP488_00687.
       0.472
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.