STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK14196.1PFAM: Ornithine cyclodeaminase/mu-crystallin family; JGI identifier:CP488_00759. (324 aa)    
Predicted Functional Partners:
CEK13995.1
Alanine-glyoxylate aminotransferase apoenzyme; PFAM: Aminotransferase class-V; JGI identifier:CP488_00689.
    
 0.906
CEK17706.1
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
     
 0.820
CEK12482.1
glycine/D-amino acid oxidase, deaminating; PFAM: FAD dependent oxidoreductase; JGI identifier:CP488_00047.
 
  
 0.505
CEK14144.1
PFAM: Homocysteine S-methyltransferase; JGI identifier:CP488_00739.
  
   
 0.469
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.