STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK14421.1PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; JGI identifier:CP488_00832. (542 aa)    
Predicted Functional Partners:
CEK14453.1
Multidrug resistance efflux pump; PFAM: HlyD family secretion protein; Biotin-lipoyl like; JGI identifier:CP488_00843.
 
 0.919
CEK14423.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; JGI identifier:CP488_00833.
       0.773
CEK15233.1
Multidrug resistance efflux pump; PFAM: HlyD family secretion protein; JGI identifier:CP488_01100.
 
 
 0.594
CEK14426.1
PFAM: Inositol monophosphatase family; JGI identifier:CP488_00834.
       0.592
CEK14429.1
Hypothetical protein; JGI identifier:CP488_00835.
       0.546
CEK14432.1
PFAM: Phytanoyl-CoA dioxygenase (PhyH); JGI identifier:CP488_00836.
       0.513
CEK14417.1
PFAM: Putative esterase; JGI identifier:CP488_00831.
     
 0.500
CEK15787.1
PFAM: Uncharacterized conserved protein (DUF2156); JGI identifier:CP488_01285.
  
   
 0.439
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.