STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK14845.1PFAM: Type II secretion system (T2SS), protein E, N-terminal domain; Type II/IV secretion system protein; TIGRFAM: type II secretion system protein E; JGI identifier:CP488_00968. (586 aa)    
Predicted Functional Partners:
CEK14842.1
PFAM: Type II secretion system (T2SS), protein F; TIGRFAM: type II secretion system protein F; JGI identifier:CP488_00967.
 
 0.977
CEK15747.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F; JGI identifier:CP488_01271.
 
 
 0.905
CEK15750.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F; JGI identifier:CP488_01272.
 
 
 0.905
CEK20598.1
Type II secretory pathway, component PulF; PFAM: Type II secretion system (T2SS), protein F; JGI identifier:CP488_02908.
 
 0.905
CEK14838.1
PFAM: Type IV pilin N-term methylation site GFxxxE; Type II secretion system (T2SS), protein G; TIGRFAM: type II secretion system protein G; prepilin-type N-terminal cleavage/methylation domain; JGI identifier:CP488_00966.
 
   0.867
CEK20601.1
PFAM: Bacterial Peptidase A24 N-terminal domain; Type IV leader peptidase family; JGI identifier:CP488_02909.
 
 
 0.845
CEK14814.1
Type II secretory pathway, component PulD; PFAM: Bacterial type II/III secretion system short domain; Bacterial type II and III secretion system protein; TIGRFAM: type II secretion system protein D; JGI identifier:CP488_00958.
 
  
 0.842
CEK14832.1
PFAM: Type II secretion system (T2SS), protein I; TIGRFAM: type II secretion system protein I; prepilin-type N-terminal cleavage/methylation domain; JGI identifier:CP488_00964.
  
   0.797
CEK14826.1
Type II secretory pathway, component PulK; PFAM: Helix-hairpin-helix motif; Type II secretion system (T2SS), protein K; JGI identifier:CP488_00962.
  
  
 0.731
CEK14835.1
PFAM: Type IV pilin N-term methylation site GFxxxE; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; JGI identifier:CP488_00965.
     
 0.699
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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