STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK15198.1Predicted glycosyltransferase; PFAM: Glycosyl transferase family 2; JGI identifier:CP488_01087. (295 aa)    
Predicted Functional Partners:
CEK16262.1
PFAM: Bacterial sugar transferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; JGI identifier:CP488_01449.
 
  
 0.858
CEK13558.1
Flagellar motor switch protein FliN; PFAM: Surface presentation of antigens (SPOA); TIGRFAM: flagellar motor switch protein FliN; JGI identifier:CP488_00539.
    
   0.722
CEK14874.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
  
 0.671
CEK15201.1
Peroxiredoxin; PFAM: AhpC/TSA family; JGI identifier:CP488_01088.
  
    0.564
CEK17213.1
PFAM: Glycosyl transferase WecB/TagA/CpsF family; TIGRFAM: bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family; JGI identifier:CP488_01775; Belongs to the glycosyltransferase 26 family.
 
  
 0.438
CEK12945.1
Hypothetical protein; JGI identifier:CP488_00281.
 
     0.416
CEK19090.1
Glycosyl transferase possibly involved in lipopolysaccharide synthesis; PFAM: Bacterial sugar transferase; JGI identifier:CP488_02402.
 
  
 0.410
CEK20343.1
PFAM: AAA domain; Chain length determinant protein; TIGRFAM: capsular exopolysaccharide family; JGI identifier:CP488_02825.
  
  
 0.402
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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