STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CEK15233.1Multidrug resistance efflux pump; PFAM: HlyD family secretion protein; JGI identifier:CP488_01100. (442 aa)    
Predicted Functional Partners:
CEK15230.1
PFAM: Outer membrane efflux protein; JGI identifier:CP488_01099.
 
 
 0.907
CEK15236.1
Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump, CzcA family; JGI identifier:CP488_01101; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   
 0.833
CEK19773.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: MacB-like periplasmic core domain; FtsX-like permease family; JGI identifier:CP488_02634.
 
 
 0.791
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
  
    0.782
CEK15220.1
PFAM: Radical SAM superfamily; Domain of unknown function (DUF3463); TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnH; JGI identifier:CP488_01095.
       0.776
CEK15223.1
Hopanoid-associated sugar epimerase; PFAM: NAD dependent epimerase/dehydratase family; TIGRFAM: hopanoid-associated sugar epimerase; JGI identifier:CP488_01096.
       0.773
CEK15227.1
PFAM: Phosphorylase superfamily; JGI identifier:CP488_01098.
       0.773
CEK12450.1
PFAM: Outer membrane efflux protein; JGI identifier:CP488_00030.
 
 
 0.699
CEK18425.1
PFAM: Outer membrane efflux protein; JGI identifier:CP488_02180.
 
 
 0.655
CEK19779.1
PFAM: Outer membrane efflux protein; JGI identifier:CP488_02636.
 
 
 0.632
Your Current Organism:
Chthonomonas calidirosea
NCBI taxonomy Id: 454171
Other names: C. calidirosea, Chthonomonas calidirosea Lee et al. 2011, DSM 23976, ICMP 18418, strain T49
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